Tool Request - Request a tool on etool.me

 At 2013-12-24 01:40:38 AM - 

You've just developed a cool bioinformatics tool and you want it to be available on the web. Please raise your request here! 

In order for your tool to be further developed to web portal, you need to provide us:

1) Source code -- your software should be open-source.
2) Link to a published paper.
3) A short video introducing your research project
4) Your software logo (optional).

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Phylogenetic Signal Refinement

 At 2013-12-18 08:21:14 AM

Hello!

Thank you for this excellent initiative of making bioinformatics tools accessible to biologists!

Kindly consider my software - a tool for phylogenetic signal refinement of multiple sequence alignments - for etools.me. Many biologists have expressed their interest in this tool; adding it to etools.me will definitely help the tool reach a much wider audience.

The paper describing the novel methods used in the tool was published in the journal 'Molecular Biology and Evolution' (2013, Volume 30, Issue 3, pages 689-712). The abstract can be found here: http://lcbb.epfl.ch/softwares/SR.html">http://lcbb.epfl.ch/softwares/SR.html

The software and detailed installation instructions are available here: http://lcbb.epfl.ch/softwares/SR.html">http://lcbb.epfl.ch/softwares/SR.html. Please let me know if any other details are needed from me.

Thank you very much!
Regards,

Vaibhav Rajan,
Research Scientist
Xerox Research Centre India
vaibhav.rajan@xerox.com
     

 At 2013-12-19 06:35:21 PM

Hi Author,There is a bug as the attached image http://s29.postimg.org/w7vo1js0n/a13.png

 At 2013-12-19 06:37:44 PM

Dataset : http://lcbb.epfl.ch/softwares/all_data.zip (http://lcbb.epfl.ch/softwares/SR.html). I tried about 109 minutes but I didn't see any result.Thanks,

 At 2013-12-24 01:40:06 AM

Hi all,It is ready now at http://etool.me/software/psr
SFselect is ready online

 At 2013-08-27 11:42:47 AM

Hi all,
It is ready now at http://etool.me/software/sfselect
Please use it and feedback at http://etool.me/channel/20000000008/SFselect
Thanks
     
SFselect

 At 2013-08-18 12:05:41 PM

Hi,

Please consider our tool named SFselect. It is intended for genetic analysis of natural selection in a genome. 

Web: http://bioinf.ucsd.edu/~rronen/sfselect.html
Paper: http://www.genetics.org/content/early/2013/06/10/genetics.113.152587

Thank you,
Roy
     

 At 2013-08-18 06:22:47 PM

Hi Roy Ronen, We will review the SFselect tool. We will contact you when we start it. Thanks

 At 2013-08-18 11:18:01 PM

Hi Roy Ronen, we see this error "ImportError: No module named scikits.learn.svm.classes" . Although, we installed " scikits-learn" for python.
BFB

 At 2013-08-15 05:39:27 PM

I'd like to add the following tool to etool:

Source: https://bitbucket.org/mckinsel/bfb

Paper: http://www.pnas.org/content/110/14/5546.full

Thanks,

  Shay
     
Instructions for submitting tool.

 At 2013-08-15 10:49:20 AM

I will like to submit my tool Cerulean. Can you let me know the instructions for doing this?
See 4 answers      

 At 2013-08-15 01:59:16 PM

https://sourceforge.net/projects/ceruleanassembler/

 At 2013-08-15 01:59:39 PM

http://arxiv.org/abs/1307.7933

 At 2013-08-15 06:26:55 PM

Hi Viraj Deshpande, We will review the Cerulean tool and manage time to port it to etool. We will contact you when we start it. Thanks