Etool support - C-Sibelia support channel

 At 2017-07-18 06:22:08 PM - 



C-Sibelia helps in Comparing assemblies to a reference genome. As a result, you will get:

  • A VCF file that describes all the found variants
  • A circos picture visualizes all rearrangements

For your convenience, C-Sibelia also annotates and predicts the effects of these variants on genes using snpEff.


If you have any question of running this tool or any suggestion please feel free to ask in this channel. 
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C-Sibelia not working

 At 2017-07-18 06:22:07 PM

Since one month, I am trying to run C-Sibelia using two mitochondria genomes size around 85 kb… Still waiting for results…is there is any problem now a days with this tool. Looking forward for your reply.thank you…

with regards
Vikas
     
C-Sibelia not working

 At 2017-06-26 08:54:50 AM

Dear Etool support members,

Since last week I am trying to run C-Sibelia using two mitochondria genomes size around 85 kb… Still waiting for results…is there is any problem now a days with this tool. Looking forward for your reply.
thank you…


with regards
Vikas
     
csibilia time to finish task

 At 2017-01-22 06:50:57 PM

Hello friends,

i seem to be stuck…after loading to fasta files in csibelia …
the system says it will notify me when its done.
but nothing happens…waiting for up to 1 hour??!

what can i do to process it?

Sincerely
Ofir.
     
SNPeff fail

 At 2015-08-09 10:54:18 PM

Hi, 
I've been trying to run your tool on a number of different genome files (.fna) but I keep getting the same SNPeff failed error message.  The circos files are generated ok.  Is it something I'm doing?  Should the designation be .fasta explicitly?
Any help gratefully received,
Thanks
David
     
Running time

 At 2014-02-20 06:34:51 AM

Dear CSibelia Team,

I want to know how much time does the online web app takes to finish comparison of two genomes (4.5 Mb file size each) (snp summary and circos diagram included).

Thank you.
     

 At 2014-03-10 04:32:40 AM

Hi Mr,Normally, the online web app finish the CSibelia process in some minutes.Thanks